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Keynote speakers: |
preliminary
titles:
|
MIGE guidelines
|
Stephen A. Bustin
Professor of Molecular Science, Institute of Cell and Molecular
Science, Queen Mary's School of Medicine and Dentistry, University of
London, UK
Stephen Bustin obtained his PhD from Trinity
College, University of
Dublin in molecular genetics in 1983. Since 1989 he has worked at the
Royal London Hospital, aiming to apply his research in a more direct,
practical setting. Following promotion to Senior Lecturer (1995) and
Reader in Molecular Medicine (2002) he was awarded a personal chair by
the University of London in 2004. He was appointed as a visiting
Professor of Molecular Biology by the University of Middlesex in 2006.
His main area of research is into bowel-associated pathologies,
especially colorectal cancer and, more recently, Clostridium
difficile-associated disease. He has a special interest in molecular
technologies and his laboratory operates at the forefront of
technological development in nucleic acid quantification, where he is
an internationally acknowledged leader. He has published numerous
peer-reviewed papers and reviews and is the editor of the “A-Z of
quantitative PCR”, the leading textbook for this technology. He is on
the editorial boards of several journals and has given numerous
presentations at scientific conferences around the world. He has
organized and co-organised many qPCR meetings in the UK, Europe and the
US.
|
MIQE compliance and impact
factor-which results to trust?
|
digital PCR |
Dennis YM Lo
Department of Chemical Pathology, The Chinese
University of Hong Kong, China
Professor Dennis Lo Yuk-ming is the Dr. Li Ka Shing Professor of
Medicine and Professor of Chemical Pathology at The Chinese University
of Hong Kong. He is also the Associate ResearchDean
of the Faculty
of Medicine and the Director of the Li Ka Shing Institute of Health
Sciences at CUHK. Professor Dennis Lo’s main research interest is the
study of cell-free DNA and RNA molecules which exist in the plasma of
human subjects. He discovered in 1997 that an unborn fetus will release
its DNA into the plasma of a pregnant woman. This finding has opened up
a new approach of non-invasive prenatal diagnosis. He has also applied
a similar strategy to the detection of cancers which are common in Hong
Kong, including nasopharyngeal cancer and liver cancer.
|
Noninvasive prenatal diagnosis using fetal DNA in maternal
plasma: from digital PCR to next-generation sequencing
|
single-cell qPCR |
Mikael Kubista
Professor
of Biotechnology, TATAA Biocenter Sweden, Göteborg,
Sweden
Mikael
Kubista
is
head of
department of gene expression at the institute of Molecular Genetics,
Czech Academy of Sciences, and founder of TATAA Biocenter AB. Inventor
of several of the technologies used at TATAA Biocenter. Founder also of
LightUp Technologies AB and MultiD Analysis.
|
25 years of PCR - from
idea to subcellular expression profiling
|
Next Generation
Sequencing
|
Yu-Hui Rogers
Vice President, Core Technology Development and
Services, J. Craig Venter Institute, San Diego, USA
Yu-Hui Rogers is a recognized leader in the
field of
designing and
deploying large-scale DNA sequencing projects and pipelines, Yu-Hui C.
Rogers joined the Venter Institute in 2002. She currently serves as the
Vice President of Core Technology Development and Services at the J.
Craig Venter Institute. Ms. Roger’s areas of expertise include
development, implementation, and management of DNA sequencing
facilities and nucleic acid technology development. Before joining the
Venter Institute, she was the Manager of Sequencing
Research and Development at Celera Genomics. She was instrumental in
the development and implementation of the Celera high-throughput
sequencing pipeline that allowed the human genome sequence to be
completed in 14 months. In addition, she was responsible for
implementing and managing a forensic resequencing pipeline at Celera.
This pipeline was specifically set up to perform the mtDNA resequencing
on the World Trade Center (WTC) victim and reference samples for the
purpose of identifying the WTC victims. Prior to joining Celera, she
was a scientist at Molecular Tool, Inc. At
Molecular Tool, she was involved in the developed of several novel
methods for nucleic acid sequence detection and analysis.
|
Research Overview &
Application of Next Generation Sequencing Technologies at JCVI
|
pre-PCR
|
Jo Vandesompele
Center for Medical Genetics Ghent, Ghent University Hospital, Ghent,
Belgium
Jo Vandesompele is a Professor in
bioinformatics and
biocomputing at the Center for Medical Genetics, Ghent University since
2007. He is author of various pioneering publications in the area of
real-time PCR. Together with Jan Hellemans he developed advanced and
universally applicable quantification methods for automated and
accurate qPCR data analysis. He is also the co-founder of Biogazelle,
the real-time PCR data-analysis company.
|
Measurable impact of RNA
quality on gene expression
results from quantitative
PCR
|
|
|
Invited
academic
speakers:
|
preliminary
titles:
|
Single-cell
qPCR
|
Anders
Stahlberg
PhD, Stem Cell
Center, Lund University, Lund, Sweden
|
Understanding
Tumor Heterogeneity Using Single-Cell Gene Expression Profiling |
microRNA analysis
|
Jan Helemanns
PhD, Center for Medical Genetics Ghent, Ghent University Hospital,
Ghent,
Belgium
Biogazelle NV, Kruishoutemstraat 57, Zulte, Belgium
|
Development
of an ultra-high throughput long non-coding RNA qPCR screening system
|
HRM
|
Robert Löwe
CEO, Genewake Pharmacogenomics, München-Neuried, Germany
|
Quantification of specific mutation with
HRM for regions of interest
|
NGS & qRT-PCR application
|
Michael
W.
Pfaffl
Physiology,
Center of Life Science, Weihenstephan,
Technical
University
of Munich, Freising, Germany
|
The
use
of qRT-PCR
and high
throughput transcriptomics for biomarker development
|
digital PCR
|
Frank McCaughan
Medical Research Council, Laboratory of Molecular Biology, Cambridge
Cancer Center, Cambridge, UK
|
Digital PCR - getting the most out of
difficult clinical sample
|
NGS
|
Bertram Brenig
Institute of Veterinary Medicine, Dept. of Molecular Biology of
Livestock, Georg August University Göttingen, Germany
|
Analysis of circulating nucleic acids (CNA)
using different NGS technologies
|
High Throughput
NGS
|
Filip Pattyn
PhD, Center for Medical Genetics Ghent, Ghent University Hospital,
Ghent,
Belgium
|
PrimerXL:
high-throughput
assay design for qPCR and amplicon based NGS
|
MIQE & QM session
|
Afif Abdel Nour &
Michael
W.
Pfaffl
Associate Professor in Molecular Biotechnology, Institut Polytechnique
LaSalle Beauvais, France &
Professor in Molecular Physiology, TUM,
Freising, Germany
|
"Stay
in
touch
while on the bench" MIQE qPCR
|
bioinformatics & optimisation
|
David Kennard
CEO, AzurePCR, London, UK & Ramat Gan,
Israel
|
Is normalisation neccessary? A novel
method for fully automated analysis of qPCR using raw cycler output data
|
Single-cell
qPCR / pre-PCR
|
Karl H. Hasenstein
Professor in Biology, University of
Louisiana, Lafayette, LA, USA
|
Solid Phase Gene Extraction – Sampling of
mRNA from living systems
|
high-throughput PCR / NGS
|
Kevin Knudtson
Director, DNA Facility at University of Iowa, Iowa City, USA
|
Using Nanoscale PCR and NGS Technologies to
Detect Rare Sequence Variants in a Core Setting
|
bioinformatics |
Philip Zimmermann
PhD, Group Leader - Genevestigator Project at ETH Zurich, ETH-Zentrum,
Institut für Pflanzenwissenschaften, Zürich, Switzerland
|
Interpretation
requires context - making sense out of gene lists and networks. |
microRNA
|
Swanhild
Meyer
Physiology, Center of Life
Science, Weihenstephan, Technical
University
of Munich, Freising, Germany
|
Normalization strategies and miRNA
profiling data
|
NGS |
Andreas Nitsche
Head of Konsiliarlaboratorium für Pockenviren, Robert
Koch-Institut, Berlin, Germany
|
Deep
sequencing as diagnostic tool for highly pathogenic viruses
|
bioinformatics & optimisation
|
Andreas Untergasser
Guest Scientist, Zentrum für Molekulare
Biologie der Universität Heidelberg, DKFZ-ZMBH Alliance,
Heidelberg, Germany
|
Primer3: Improvements for the design
of
qPCR primers
|
Single-cell
qPCR |
Philip Day
Reader in Quantitative Analytical Genomics, Manchester University,
Director of Quantitative Molecular Medicine and Principal Investigator
at the Manchester Interdisciplinary Biocentre, UK
|
Single
cell analyses of bcr-abl transcripts in leukemia reveals distinct
sub-populations |
biostatistics
|
Ales Tichopad
Staff Scientist, Technical
University
of Munich, Freising, Germany
|
Stratified
error in the qPCR assays from the statistical point of view |
RDML
session
|
Jan Helemanns & Andreas
Untergasser
RDML consortium
|
RDML - structured language for real-time
quantitative PCR data
RDML -
state of the art & open discussion on Wednesday afternoon
|
MIQE
session
|
Stephen Bustin, Mikael Kubista,
Jo Vandesompele & Michael W. Pfaffl
MIQE authors
|
The MIQE guidelines - minimum information
for publication of quantitative real-time PCR experiments
MIQE - state of the art & open discussion on Wednesday afternoon
|
|
|
Industrial
sponsored
speakers:
|
preliminary
titles: |
|
Lead
Sponsor:
|
|
Diagnostics
|
Sabine Lohmann
Roche Diagnostics GmbH, Nonnenwald, Penzberg, Germany
|
Customized,
function-tested RealTime ready assays for gene expression analysis in
biomarker reasearch and early drug development
|
NGS
|
Paolo
Piazza
Genomic Services of the Wellcome Trust Center of Human Genomics in
Oxford
invited
by Agilent Technologies
|
Improved
library quantification for High Throughput Sequencing at the Wellcome
Trust of Human Genetics Oxford |
HT
|
Barbara
D'haene
Scientist, Biogazelle
NV, Kruishoutemstraat 57, Zulte, Belgium
invited
by Roche Diagnostics
|
Convenient and reliable gene expression
profiling using RealTime ready Focus Panels in combination with sound
data-analysis using qbasePLUS
|
Diagnostics in single-cells
|
Jan
Detmers
CEO, Chimera Biotec, Biomedizinzentrum,
Technologie-Park
Dortmund
invited
by Agilent Technologies
|
Quantitative
Immuno-PCR based on Imperacer: Technology, Platform & Analytical
Applications |
|
|
Gold
Sponsors: |
|
single-cell qPCR
|
Arjun Raj
Principal Investigator, Assistant Professor, Penn Bioengineering,
Skirkanich Hall, Room 240, Philadelphia, USA
invited by Biosearch Technologies
|
Single Molecule RNA FISH: novel, simple,
and accurate quantitative applications for gene expression analysis
|
microRNA
|
Ditte Andreasen
Senior Scientist , Exiqon, DK-2950 Vedbaek, Denmark
|
Towards blood-based cancer screening using
LNA™-enhanced miRNA qPCR
|
NGS
|
Rygus
Thomas
Life Technologies GmbH, Applied Biosystems Division, Germany
|
Qualitative and Quantitative Analysis of
RNA by SOLiD Next Generation Sequencing
|
from Analog to Digital Expression
|
Jim White
Scientist, Nanostring, Banstead, United Kingdom
|
Digital
gene expression, miRNA and CNV - a bridge to the Clinic |
Epigenetics
|
Frank Bizouarn
Bio-Rad Laboratories, Gene Expression Division, Hercules, CA and
2Bio-Rad Laboratories, Germany
|
Quantitative Assessment of Chromatin
Structure: Analysis of Epigenetically Regulated Gene Promoters Using
Real-time PCR
|
Pre-PCR / CNA |
Martin Horlitz
Senior Scientists von R&D, Qiagen, Hilden,
Germany
|
Isolation and Analysis of Circulating
Nucleic Acids: Technical Advances |
digital PCR
|
Elena
Grigorenko
Senior Scientist, Life Technologies, Inc, United
States of America
|
Digital PCR or Finding The Needle In A
Haystack
|
single-cell qPCR |
Ken Livak
Fluidigm, South San Francisco, CA, USA
|
Uncovering
the Diversity of Individual Cells: Gene Expression Profiling with
the BioMark System |
qPCR QC
|
Jaakko Kurkela
Research and Development Manager, Thermo Fisher Scientific, ABgene
House, Blenheim Road, Epsom, Surrey, KT19 9AP, England
|
Improved
Accuracy of Relative Gene Expression |
optimisation
|
Scott Rose
Director of Molecular Biology Applications, IDT -
Integrated DNA Technologies
|
Designing Genome-wide qPCR Assays with ZEN™
Double-Quenched Probes
|
microRNA / RNAi |
Nikos Hontzeas
Global Product Manager, Functional Genomics, Sigma
Life Science, Sigma-Aldrich Corporation, St.
Louis, MO, USA
|
microRNA target validation: MISSION
3'UTR Lenti GoClones and Human MicroRNA Mimics
|