
Exosomes and
Extracellular-Vesicles (EVs)
... ... the RNA content and the
physiological functions
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Interesting
links:
Leadling Exosome Societies &
Journals:
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extracellular
RNA
( exRNA )
http://exRNA.org
Ribonucleic
acid
(RNA) was once thought to exist in a
stable form only inside cells, where
it served as an intermediate in the
translation from genes to proteins.
However, recent research has
indicated that RNAs can play a role
in a variety of complex cellular
functions, including newly
discovered mechanisms of
cell-to-cell communication. RNA can
be exported from cells in
extracellular vesicles or bound to
lipids or proteins, to circulate
through the body and affect cells at
a great distance. These
extracellular RNAs, or “exRNAs,” may
also be absorbed from food, the
microbes that live in our bodies, or
the environment, potentially
eliciting a variety of biological
responses. However, the actual
impact of these exRNAs is not known.
An opportunity exists to establish
entirely new paradigms of
intercellular and inter-species
information exchange based on the
release, transport, uptake, and
regulatory role of exRNAs.
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WHAT IS
EXOSOME RNA?
Exosomes
are cell-derived vesicles with the
size of 50-150 nm, that are present
in many and perhaps all biological
fluids, including blood,
cerebrospinal fluid, saliva, urine,
and cultured medium of cell
cultures. Exosomes contain various
molecular constituents of their cell
of origin, including proteins, DNA
and various types of RNA.
It is becoming increasingly clear
that exosomes have specialized
functions, majorly in cell-to-cell
communication in an endocrine
manner, and play a key role in, for
example, coagulation, intercellular
signaling, waste management, and
possibly in all physiological
processes.
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The
launch
of Journal of Extracellular
Vesicles (JEV), the official
journal of the International
Society for Extracellular Vesicles
about microvesicles, exosomes,
ectosomes and other extracellular
vesicles
Jan Lötvall, Lawrence Rajendran, Yong
Song Gho, Clotilde Thery, Marca
Wauben, Graca Raposo, Margareta
Sjöstrand, Douglas Taylor, Esbjörn
Telemo and Xandra O. Breakefield.
Journal of Extracellular Vesicles
2012, 1: 18514
=>
https://www.isev.org/journal-of-extracellular-vesicles
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EVSEARCH
-- Extracellular Vesicle Research
Center Denmark
EVSearch
is a society of Danish researchers
with a broad interest in
extracellular vesicles and their
biological functions and cargos. http://evsearch.dk
WHY
... EVSEARCH
During
the past few years intense and
exciting research in extra-cellular
vesicles has generated evidence for
a new system for the exchange of
information between tissues.
Extracellular vesicles display a
variable and abundant spectrum of
bio-active substances and receptors
on their surface, and harbor a
concentrated set of cytokines,
signaling proteins and various forms
of RNA, allowing specific
interaction and cross-talk with
various target tissues. Thus,
extracellular vesicles may be
considered as veritable vectors for
the intercellular exchange and
biological signals and information,
and may transfer part of their
components and content to selected
target cells, thus mediating cell
activation, phenotypic modification,
and reprogramming of cell function.
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Methods
and Videos on Extracellular RNA
- Laboratory Methods
- Databases/Libraries
- Research Tools
- Informational Videos
Learn
more about Unlocking
the Mysteries of Extracellular RNA
Communication here. Watch a
mini documentary series on Exosomes
by Life TechnologiesCorp, featuring
several ExRNA Communication grantees
and Working Group members!
- Part 1: What is an Exosome?
Exit Disclaimer
- Part 2: The History and
Promise of Exosomes
- Part 3: Exosomes in Cancer
Research
- Part 4: Curiosity and a
Passion for Science
- Part 5: Collaboration - The
Key to Scientific Success
- Part 6: Exosomes - The Next
Small Thing
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Extracellular
Vesicles - the cells' secret
messengers
https://www.youtube.com/watch?v=sx6M8UAkUSM
Excellular vesicles are small areas of
cellular membranes that bud inwardly
or outwardly, often carrying cargo
from one cell to another. Research is
only now beginning to understand how
these little packets of information
allow cells to talk to one another.
Please visit isev.org to find out more
about vesicles, the cells' secret
messengers.
Please expand this movie to fill the
screen, and then use your mouse to pan
around in the movie.
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The
International Society for
Extracellular Vesicles launches
the first massive open online
course on extracellular
vesicles.
Lässer C, Théry C, Buzás EI,
Mathivanan S, Zhao W, Gho YS, Lötvall
J
J Extracell Vesicles. 2016 5: 34299
The
International
Society for Extracellular Vesicles
(ISEV) has organised its first
educational online course for
students and beginners in the field
of extracellular vesicles (EVs).
This course, "Basics of
Extracellular Vesicles" uses
recorded lectures from experts in
the field and will be open for an
unlimited number of participants.
The course is divided into 5
modules and can be accessed at
www.coursera.org/learn/extracellular-vesicles
The first module is an
introduction to the field covering
the nomenclature and history of EVs.
Module 2 focuses on the
biogenesis and uptake mechanisms of
EVs, as well as their RNA, protein
and lipid cargo. Module 3 covers the
collection and processing of cell
culture media and body fluids such
as blood, breast milk, cerebrospinal
fluid and urine prior to isolation
of EVs. Modules 4 and 5
present different isolation methods
and characterisation techniques
utilised in the EV field. Here,
differential ultracentrifugation,
size-exclusion chromatography,
density gradient centrifugation,
kit-based precipitation, electron
microscopy, cryo-electron
microscopy, flow cytometry,
atomic-force microscopy and
nanoparticle-tracking analysis are
covered.
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Introduction & Overview
Exosomes
are cell-derived vesicles that are present
in many tissues and (perhaps) in all
biological fluids, including blood, milk,
urine, sweat and cell culture supernatant.
The reported size of exosomes is between 30
and 100 nm in diameter. There are a lot of
release mechanisms proposed. Exosomes are
either released from the cell when
cytoplasmic multivesicular bodies fuse with
the plasma membrane or they are released
directly from the plasma membrane. You will
find interesting papers about the exosome
biogenesis and the exosome release
below!
It is becoming increasingly clear that
exosomes have specialized functions and
play a key role in inter-cellular
communication, e.g. in the immune
system, in cancer progression, in
coagulation, in intercellular signalling,
and in cellular waste management.
Consequently, there is a growing interest in
molecular
diagnostic and in clinical
application of exosomes. Exosomes
can potentially be used for prognosis,
therapy, and biomarkers for health or
disease, especially in cancer progression
and metastasis.
A lot of research is done in exosome
purification and isolation, their
size and content characterization, by
quantifying surface- and intra-luminal
proteins, membrane fatty acids, and the high
concentrated regulative small RNA.
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Exosomes --
Current knowledge of their composition,
biological functions, and diagnostic and
therapeutic potentials.
Vlassov AV, Magdaleno S, Setterquist R, Conrad
R.
Biochim Biophys Acta. 2012 1820(7): 940-948
BACKGROUND:
Cells continuously secrete a large number of
microvesicles, macromolecular complexes, and
small molecules into the extracellular
space. Of the secreted microvesicles, the
nanoparticles called exosomes are currently
undergoing intense scrutiny. These are small
vesicles (30-120 nm) containing nucleic acid
and protein, perceived to be carriers of
this cargo between diverse locations in the
body. They are distinguished in their
genesis by being budded into endosomes to
form multivesicular bodies (MVBs) in the
cytoplasm. The exosomes are released to
extracellular fluids by fusion of these
multivesicular bodies with the cell surface,
resulting in secretion in bursts. Exosomes
are secreted by all types of cells in
culture, and also found in abundance in body
fluids including blood, saliva, urine, and
breast milk.
SCOPE
OF REVIEW: In this review, we summarize
strategies for exosome isolation, our
understanding to date of exosome
composition, functions, and pathways, and
discuss their potential for diagnostic and
therapeutic applications.
MAJOR
CONCLUSIONS: Currently, the control of
exosome formation, the makeup of the
"cargo", biological pathways and resulting
functions are incompletely understood. One
of their most intriguing roles is
intercellular communication--exosomes are
thought to function as the messengers,
delivering various effectors or signaling
macromolecules between supposedly very
specific cells.
GENERAL
SIGNIFICANCE: Both seasoned and newer
investigators of nanovesicles have presented
various viewpoints on what exosomes are,
with some differences but a large common
area. It would be useful to develop a
codified definition of exosomes in both
descriptive and practical terms. We hope
this in turns leads to a consistent set of
practices for their isolation,
characterization and manipulation.
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Extracellular
Vesicles -- Exosomes, Microvesicles, and
friends.
Raposo G and Stoorvogel W
J Cell Biol. 2013 200(4): 373-383
Cells
release into the extracellular environment
diverse types of membrane vesicles of
endosomal and plasma membrane origin called
exosomes and microvesicles, respectively.
These extracellular vesicles (EVs) represent
an important mode of intercellular
communication by serving as vehicles for
transfer between cells of membrane and
cytosolic proteins, lipids, and RNA.
Deficiencies in our knowledge of the
molecular mechanisms for EV formation and
lack of methods to interfere with the
packaging of cargo or with vesicle release,
however, still hamper identification of
their physiological relevance in vivo. In
this review, we focus on the
characterization of EVs and on currently
proposed mechanisms for their formation,
targeting, and function.
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Identification
of distinct nanoparticles and subsets of
extracellular vesicles by asymmetric flow
field-flow fractionation.
Zhang H, Freitas D, Kim HS, Fabijanic K, Li Z,
Chen H, Mark MT, Molina H, Martin AB, Bojmar
L, Fang J, Rampersaud S, Hoshino A, Matei I,
Kenific CM, Nakajima M, Mutvei AP, Sansone P,
Buehring W, Wang H, Jimenez JP, Cohen-Gould L,
Paknejad N, Brendel M, Manova-Todorova K,
Magalhães A, Ferreira JA, Osório H, Silva AM,
Massey A, Cubillos-Ruiz JR, Galletti G,
Giannakakou P, Cuervo AM, Blenis J, Schwartz
R, Brady MS, Peinado H, Bromberg J, Matsui H,
Reis CA, Lyden D
Nat Cell Biol. 2018 20(3): 332-343
The
heterogeneity of exosomal populations has
hindered our understanding of their
biogenesis, molecular composition,
biodistribution and functions. By employing
asymmetric flow field-flow fractionation
(AF4), we identified two exosome
subpopulations (large exosome vesicles,
Exo-L, 90-120 nm; small exosome vesicles,
Exo-S, 60-80 nm) and discovered an
abundant population of non-membranous
nanoparticles termed 'exomeres' (~35 nm).
Exomere proteomic profiling revealed an
enrichment in metabolic enzymes and hypoxia,
microtubule and coagulation proteins as well
as specific pathways, such as glycolysis and
mTOR signalling. Exo-S and Exo-L contained
proteins involved in endosomal function and
secretion pathways, and mitotic spindle and
IL-2/STAT5 signalling pathways,
respectively. Exo-S, Exo-L and exomeres each
had unique N-glycosylation, protein, lipid,
DNA and RNA profiles and biophysical
properties. These three nanoparticle subsets
demonstrated diverse organ biodistribution
patterns, suggesting distinct biological
functions. This study demonstrates that AF4
can serve as an improved analytical tool for
isolating extracellular vesicles and
addressing the complexities of heterogeneous
nanoparticle subpopulations.
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| Exosome Nomenclature |
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Minimal
experimental requirements for definition
of extracellular vesicles and their
functions: a position statement from the
International Society for Extracellular
Vesicles.
Lötvall J, Hill AF, Hochberg F, Buzás EI, Di
Vizio D, Gardiner C, Gho YS, Kurochkin IV,
Mathivanan S, Quesenberry P, Sahoo S, Tahara
H, Wauben MH, Witwer KW, Théry C.
J Extracell Vesicles. 2014 (3): 26913
Secreted membrane-enclosed vesicles,
collectively called extracellular vesicles
(EVs), which include exosomes, ectosomes,
microvesicles, microparticles, apoptotic
bodies and other EV subsets, encompass a very
rapidly growing scientific field in biology
and medicine. Importantly, it is currently
technically challenging to obtain a totally
pure EV fraction free from non-vesicular
components for functional studies, and
therefore there is a need to establish
guidelines for analyses of these vesicles and
reporting of scientific studies on EV biology.
Here, the International Society for
Extracellular Vesicles (ISEV) provides
researchers with a minimal set of biochemical,
biophysical and functional standards that
should be used to attribute any specific
biological cargo or functions to EVs.
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Updating the
MISEV minimal requirements for
extracellular vesicle studies -- building
bridges to reproducibility.
Witwer KW, Soekmadji C, Hill AF, Wauben MH,
Buzás EI, Di Vizio D, Falcon-Perez JM,
Gardiner C, Hochberg F, Kurochkin IV, Lötvall
J, Mathivanan S, Nieuwland R, Sahoo S, Tahara
H, Torrecilhas AC, Weaver AM, Yin H, Zheng L,
Gho YS, Quesenberry P, Théry C
J Extracell Vesicles. 2017 Nov 15;6(1):
1396823 -- eCollection 2017
An editorial describing “minimal experimental
requirements for definition of extracellular
vesicles (EVs)”, or more simply “minimal
information for studies of EVs (MISEV)” was
published in the Journal of Extracellular
Vesicles in late 2014 [1]. Similar to
guidelines in other scientific fields [2–4],
“MISEV2014”, as we will call it here, provided
recommendations on experimental methods and
minimal information in reporting.
Specifically, three key areas were addressed:
EV isolation/purification, EV characterization
and EV functional studies (see table belox --
Box 1).
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Minimal
information for studies of extracellular
vesicles 2018 (MISEV2018) -- a position
statement of the International Society for
Extracellular Vesicles and update of the
MISEV2014 guidelines.
Clotilde Théry, Kenneth W Witwer, et al. ...
... and 300 more :-)
Journal of
Extracellular Vesicle 2019 8(1) Published online 23
Nov 2018
The last decade has seen a sharp increase in
the number of scientific publications
describing physiological and pathological
functions of extracellular vesicles (EVs), a
collective term covering various subtypes of
cell-released, membranous structures, called
exosomes, microvesicles, microparticles,
ectosomes, oncosomes, apoptotic bodies, and
many other names. However, specific issues
arise when working with these entities, whose
size and amount often make them difficult to
obtain as relatively pure preparations, and to
characterize properly. The International
Society for Extracellular Vesicles (ISEV)
proposed Minimal Information for Studies of
Extracellular Vesicles (“MISEV”) guidelines
for the field in 2014. We now update these
“MISEV2014” guidelines based on evolution of
the collective knowledge in the last four
years. An important point to consider is that
ascribing a specific function to EVs in
general, or to subtypes of EVs, requires
reporting of specific information beyond mere
description of function in a crude,
potentially contaminated, and heterogeneous
preparation. For example, claims that exosomes
are endowed with exquisite and specific
activities remain difficult to support
experimentally, given our still limited
knowledge of their specific molecular
machineries of biogenesis and release, as
compared with other biophysically similar EVs.
The MISEV2018 guidelines include tables and
outlines of suggested protocols and steps to
follow to document specific EV-associated
functional activities. Finally, a checklist is
provided with summaries of key points.
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Methodological
Guidelines to Study Extracellular
Vesicles.
Coumans FAW, Brisson AR, Buzas EI,
Dignat-George F, Drees EEE, El-Andaloussi S,
Emanueli C, Gasecka A, Hendrix A, Hill AF,
Lacroix R, Lee Y, van Leeuwen TG, Mackman N,
Mäger I, Nolan JP, van der Pol E, Pegtel DM,
Sahoo S, Siljander PRM, Sturk G, de Wever O,
Nieuwland R
Circ Res. 2017 120(10): 1632-1648
Owing
to the relationship between extracellular
vesicles (EVs) and physiological and
pathological conditions, the interest in EVs
is exponentially growing. EVs hold high
hopes for novel diagnostic and translational
discoveries. This review provides an
expert-based update of recent advances in
the methods to study EVs and summarizes
currently accepted considerations and
recommendations from sample collection to
isolation, detection, and characterization
of EVs. Common misconceptions and
methodological pitfalls are highlighted.
Although EVs are found in all body fluids,
in this review, we will focus on EVs from
human blood, not only our most complex but
also the most interesting body fluid for
cardiovascular research.
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As we wait:
coping with an imperfect nomenclature
for extracellular vesicles.
Gould SJ and Raposo G
J Extracell Vesicles. 2013 -- eCollection
2013
There
is
increasing evidence that secreted
vesicles play important roles in
numerous aspects of biology (e.g.
intercellular vesicle traffic, immunity,
development, neurobiology and
microbiology), contribute to many human
diseases (e.g. cancer, neurodegenerative
disorders and HIV/AIDS) and have
significant biotechnological potential.
This expanding interest in extracellular
vesicles has also highlighted some
vexing problems related to their
nomenclature. At the first meeting of
the International Society for
Extracellular Vesicles (ISEV) in
Gothenburg, Sweden (April 2012), the
authors chaired a session on the issue
of vesicle nomenclature. Although it was
not possible to reach a broad agreement
on vesicle nomenclature, members of the
session did reach consensus on 2 points.
First, ISEV should strive to protect the
scientific independence of its members
on this issue. Second, that we (S.J.G.
and G.R) should articulate some of the
relevant points of concern in the
Journal of Extracellular Vesicles.
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Classification,
functions, and clinical relevance of
extracellular vesicles.
van der Pol E, Böing AN, Harrison P, Sturk A,
Nieuwland R.
Pharmacol Rev. 2012 64(3): 676-705
Both
eukaryotic and prokaryotic cells release
small, phospholipid-enclosed vesicles into
their environment. Why do cells release
vesicles? Initial studies showed that
eukaryotic vesicles are used to remove
obsolete cellular molecules. Although this
release of vesicles is beneficial to the
cell, the vesicles can also be a danger to
their environment, for instance in blood,
where vesicles can provide a surface
supporting coagulation. Evidence is
accumulating that vesicles are cargo
containers used by eukaryotic cells to
exchange biomolecules as transmembrane
receptors and genetic information. Because
also bacteria communicate to each other via
extracellular vesicles, the intercellular
communication via extracellular cargo
carriers seems to be conserved throughout
evolution, and therefore vesicles are likely
to be a highly efficient, robust, and
economic manner of exchanging information
between cells. Furthermore, vesicles protect
cells from accumulation of waste or drugs,
they contribute to physiology and pathology,
and they have a myriad of potential clinical
applications, ranging from biomarkers to
anticancer therapy. Because vesicles may
pass the blood-brain barrier, they can
perhaps even be considered naturally
occurring liposomes. Unfortunately, pathways
of vesicle release and vesicles themselves
are also being used by tumors and infectious
diseases to facilitate spreading, and to
escape from immune surveillance. In this
review, the different types, nomenclature,
functions, and clinical relevance of
vesicles will be discussed.
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Ectosomes and
exosomes: shedding the confusion between
extracellular vesicles.
Cocucci E & Meldolesi J
Trends Cell Biol. 2015 Feb 12.
Long-
and short-distance communication can take
multiple forms. Among them are exosomes and
ectosomes, extracellular vesicles (EVs)
released from the cell to deliver signals to
target cells. While most of our
understanding of how these vesicles are
assembled and work comes from mechanistic
studies performed on exosomes, recent
studies have begun to shift their focus to
ectosomes. Unlike exosomes, which are
released on the exocytosis of multivesicular
bodies (MVBs), ectosomes are ubiquitous
vesicles assembled at and released from the
plasma membrane. Here we review the
similarities and differences between these
two classes of vesicle, suggesting that,
despite their considerable differences, the
functions of ectosomes may be largely
analogous to those of exosomes. Both
vesicles appear to be promising targets in
the diagnosis and therapy of diseases,
especially cancer.
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ExoCarta 2012
-- database of exosomal proteins, RNA and
lipids.
Mathivanan S, Fahner CJ, Reid GE, Simpson RJ.
Nucleic Acids Res. 2012 40 (Database issue):
D1241-1244
Exosomes
are membraneous nanovesicles of endocytic
origin released by most cell types from
diverse organisms; they play a critical role
in cell-cell communication. ExoCarta (http://www.exocarta.org)
is a manually curated database of exosomal
proteins, RNA and lipids. The database
catalogs information from both published and
unpublished exosomal studies. The mode of
exosomal purification and characterization,
the biophysical and molecular properties are
listed in the database aiding biomedical
scientists in assessing the quality of the
exosomal preparation and the corresponding
data obtained. Currently, ExoCarta (Version
3.1) contains information on 11,261 protein
entries, 2375 mRNA entries and 764 miRNA
entries that were obtained from 134 exosomal
studies. In addition to the data update, as
a new feature, lipids identified in exosomes
are added to ExoCarta. We believe that this
free web-based community resource will aid
researchers in identifying molecular
signatures (proteins/RNA/lipids) that are
specific to certain tissue/cell type derived
exosomes and trigger new exosomal studies.
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ExoCarta -- as
a resource for exosomal research.
Simpson RJ, Kalra H, Mathivanan S.
J Extracell Vesicles. 2012 Apr 16: 1
Exosomes
are a class of extracellular vesicles that
are secreted by various cell types. Unlike
other extracellular vesicles (ectosomes and
apoptotic blebs), exosomes are of endocytic
origin. The roles of exosomes in
vaccine/drug delivery, intercellular
communication and as a possible source of
disease biomarkers have sparked immense
interest in them, resulting in a plethora of
studies. Whilst multidimensional datasets
are continuously generated, it is difficult
to harness the true potential of the data
until they are compiled and made accessible
to the biomedical researchers. Here, we
describe ExoCarta (www.exocarta.org),
a manually curated database of exosomal
proteins, RNA and lipids. Datasets currently
present in ExoCarta are integrated from both
published and unpublished exosomal studies.
Since its launch in 2009, ExoCarta has been
accessed by more than 16,000 unique users.
In this article, we discuss the utility of
ExoCarta for exosomal research and urge
biomedical researchers in the field to
deposit their datasets directly to ExoCarta.
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Vesiclepedia --
a compendium for extracellular vesicles
with continuous community annotation.
Kalra
H, Simpson RJ, Ji H, Aikawa E, Altevogt P,
Askenase P, Bond VC, Borràs FE, Breakefield
X, Budnik V, Buzas E, Camussi G, Clayton A,
Cocucci E, Falcon-Perez JM, Gabrielsson S,
Gho YS, Gupta D, Harsha HC, Hendrix A, Hill
AF, Inal JM, Jenster G, Krämer-Albers EM,
Lim SK, Llorente A, Lötvall J, Marcilla A,
Mincheva-Nilsson L, Nazarenko I, Nieuwland
R, Nolte-'t Hoen EN, Pandey A, Patel T,
Piper MG, Pluchino S, Prasad TS, Rajendran
L, Raposo G, Record M, Reid GE,
Sánchez-Madrid F, Schiffelers RM, Siljander
P, Stensballe A, Stoorvogel W, Taylor D,
Thery C, Valadi H, van Balkom BW, Vázquez J,
Vidal M, Wauben MH, Yáñez-Mó M, Zoeller M,
Mathivanan S.
PLoS Biol. 2012;10(12): e1001450
Extracellular
vesicles
(EVs) are membraneous vesicles released by a
variety of cells into their
microenvironment. Recent studies have
elucidated the role of EVs in intercellular
communication, pathogenesis, drug, vaccine
and gene-vector delivery, and as possible
reservoirs of biomarkers. These findings
have generated immense interest, along with
an exponential increase in molecular data
pertaining to EVs. Here, we describe
Vesiclepedia, a manually curated compendium
of molecular data (lipid, RNA, and protein)
identified in different classes of EVs from
more than 300 independent studies published
over the past several years. Even though
databases are indispensable resources for
the scientific community, recent studies
have shown that more than 50% of the
databases are not regularly updated. In
addition, more than 20% of the database
links are inactive. To prevent such database
and link decay, we have initiated a
continuous community annotation project with
the active involvement of EV researchers.
The EV research community can set a gold
standard in data sharing with Vesiclepedia,
which could evolve as a primary resource for
the field.
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EVpedia -- an
integrated database of high-throughput
data for systemic analyses of
extracellular vesicles.
Kim DK, Kang B, Kim OY, Choi DS, Lee J, Kim
SR, Go G, Yoon YJ, Kim JH, Jang SC, Park KS,
Choi EJ, Kim KP, Desiderio DM, Kim YK, Lötvall
J, Hwang D, Gho YS.
J Extracell Vesicles. 2013: 2 -- eCollection
2013
Secretion
of extracellular vesicles is a general
cellular activity that spans the range from
simple unicellular organisms (e.g. archaea;
Gram-positive and Gram-negative bacteria) to
complex multicellular ones, suggesting that
this extracellular vesicle-mediated
communication is evolutionarily conserved.
Extracellular vesicles are spherical
bilayered proteolipids with a mean diameter
of 20-1,000 nm, which are known to contain
various bioactive molecules including
proteins, lipids, and nucleic acids. Here,
we present EVpedia, which is an integrated
database of high-throughput datasets from
prokaryotic and eukaryotic extracellular
vesicles. EVpedia provides high-throughput
datasets of vesicular components (proteins,
mRNAs, miRNAs, and lipids) present on
prokaryotic, non-mammalian eukaryotic, and
mammalian extracellular vesicles. In
addition, EVpedia also provides an array of
tools, such as the search and browse of
vesicular components, Gene Ontology
enrichment analysis, network analysis of
vesicular proteins and mRNAs, and a
comparison of vesicular datasets by ortholog
identification. Moreover, publications on
extracellular vesicle studies are listed in
the database. This free web-based database
of EVpedia (http://evpedia.info)
might serve as a fundamental repository to
stimulate the advancement of extracellular
vesicle studies and to elucidate the novel
functions of these complex extracellular
organelles.
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EVpedia -- a
community web portal for extracellular
vesicles research.
Kim
DK1, Lee J1, Kim SR1, Choi DS1, Yoon YJ1,
Kim JH1, Go G1, Nhung D1, Hong K1, Jang SC1,
Kim SH1, Park KS1, Kim OY1, Park HT1, Seo
JH1, Aikawa E1, Baj-Krzyworzeka M1, van
Balkom BW1, Belting M1, Blanc L1, Bond V1,
Bongiovanni A1, Borràs FE1, Buée L1, Buzás
EI1, Cheng L1, Clayton A1, Cocucci E1, Dela
Cruz CS1, Desiderio DM1, Di Vizio D1,
Ekström K2, Falcon-Perez JM1, Gardiner C1,
Giebel B1, Greening DW1, Gross JC1, Gupta
D1, Hendrix A1, Hill AF1, Hill MM1, Nolte-'t
Hoen E1, Hwang DW1, Inal J1, Jagannadham
MV1, Jayachandran M1, Jee YK1, Jørgensen M1,
Kim KP1, Kim YK1, Kislinger T1, Lässer C1,
Lee DS1, Lee H1, van Leeuwen J1, Lener T2,
Liu ML2, Lötvall J1, Marcilla A1, Mathivanan
S1, Möller A1, Morhayim J1, Mullier F2,
Nazarenko I1, Nieuwland R1, Nunes DN1, Pang
K2, Park J1, Patel T1, Pocsfalvi G1, Del
Portillo H1, Putz U1, Ramirez MI1, Rodrigues
ML2, Roh TY2, Royo F1, Sahoo S1, Schiffelers
R1, Sharma S1, Siljander P1, Simpson RJ1,
Soekmadji C1, Stahl P1, Stensballe A1,
Stępień E1, Tahara H1, Trummer A1, Valadi
H1, Vella LJ1, Wai SN1, Witwer K1, Yáñez-Mó
M1, Youn H1, Zeidler R1, Gho YS1.
Bioinformatics. 2014 Nov 10. pii: btu741
MOTIVATION: Extracellular
vesicles
(EVs) are spherical bilayered proteolipids,
harboring various bioactive molecules. Due
to the complexity of the vesicular
nomenclatures and components, online
searches for EV-related publications and
vesicular components are currently
challenging.
RESULTS: We
present
an improved version of EVpedia, a public
database for EVs research. This community
web portal contains a database of
publications and vesicular components,
identification of orthologous vesicular
components, bioinformatic tools and a
personalized function. EVpedia includes 6879
publications, 172 080 vesicular components
from 263 high-throughput datasets, and has
been accessed more than 65 000 times from
more than 750 cities. In addition, about 350
members from 73 international research
groups have participated in developing
EVpedia. This free web-based database might
serve as a useful resource to stimulate the
emerging field of EV research. Availability
and implementation: The web site was
implemented in PHP, Java, MySQL and Apache,
and is freely available at www.evpedia.info
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| Exosome biogenesis and release |
|
Exosome
Explosion
By Clotilde Théry -- The Scientist 1st July
2011
These small membrane vesicles do much more
than clean up a cell’s trash—they also carry
signals to distant parts of the body, where
they can impact multiple dimensions of
cellular life.
click to
enlarge
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Biogenesis and
secretion of exosomes.
Kowal J, Tkach M, Théry C
Curr Opin Cell Biol. 2014 Aug;29: 116-125
Although
observed for several decades, the release of
membrane-enclosed vesicles by cells into
their surrounding environment has been the
subject of increasing interest in the past
few years, which led to the creation, in
2012, of a scientific society dedicated to
the subject: the International Society for
Extracellular Vesicles. Convincing evidence
that vesicles allow exchange of complex
information fuelled this rise in interest.
But it has also become clear that different
types of secreted vesicles co-exist, with
different intracellular origins and modes of
formation, and thus probably different
compositions and functions. Exosomes are one
sub-type of secreted vesicles. They form
inside eukaryotic cells in multivesicular
compartments, and are secreted when these
compartments fuse with the plasma membrane.
Interestingly, different families of
molecules have been shown to allow
intracellular formation of exosomes and
their subsequent secretion, which suggests
that even among exosomes different sub-types
exist.
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Biogenesis,
secretion, and intercellular interactions
of exosomes and other extracellular
vesicles.
Colombo M, Raposo G, Théry C.
Annu Rev Cell Dev Biol. 2014;30: 255-289
In the
1980s, exosomes were described as vesicles
of endosomal origin secreted from
reticulocytes. Interest increased around
these extracellular vesicles, as they
appeared to participate in several cellular
processes. Exosomes bear proteins, lipids,
and RNAs, mediating intercellular
communication between different cell types
in the body, and thus affecting normal and
pathological conditions. Only recently,
scientists acknowledged the difficulty of
separating exosomes from other types of
extracellular vesicles, which precludes a
clear attribution of a particular function
to the different types of secreted vesicles.
To shed light into this complex but
expanding field of science, this review
focuses on the definition of exosomes and
other secreted extracellular vesicles. Their
biogenesis, their secretion, and their
subsequent fate are discussed, as their
functions rely on these important processes.
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Biogenesis of
extracellular vesicles (EV) -- exosomes,
microvesicles, retrovirus-like vesicles,
and apoptotic bodies.
Akers JC, Gonda D, Kim R, Carter BS, Chen CC.
J Neurooncol. 2013 May;113(1): 1-11
Recent
studies suggest both normal and cancerous
cells secrete vesicles into the
extracellular space. These extracellular
vesicles (EVs) contain materials that mirror
the genetic and proteomic content of the
secreting cell. The identification of
cancer-specific material in EVs isolated
from the biofluids (e.g., serum,
cerebrospinal fluid, urine) of cancer
patients suggests EVs as an attractive
platform for biomarker development. It is
important to recognize that the EVs derived
from clinical samples are likely highly
heterogeneous in make-up and arose from
diverse sets of biologic processes. This
article aims to review the biologic
processes that give rise to various types of
EVs, including exosomes, microvesicles,
retrovirus like particles, and apoptotic
bodies. Clinical pertinence of these EVs to
neuro-oncology will also be discussed.
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Purification and
Isolation
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Exosomes --
isolation methods and specific markers
Konstantin Yakimchuk, Karolinska Institutet,
Sweden
MATER METHODS 2015;5: 1450
Various
methods for isolation of exosomes from
biological fluids have been developed. They
include centrifugation, chromatography,
filtration, polymer-based precipitation and
immunological separation. Recent technical
improvements in these methods have made the
isolation process faster and easier.
Contamination of isolated exosome with
non-exosomal particles can cause wrong
conclusions about biological activities of
obtained exosomes and therefore should be
avoided. Exosomes from different specimens
can possess different protein/lipid and
luminal contents and different sedimentation
characteristics.
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more
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Exosomes isolation methods
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| Isolation methods |
Mechanism |
Advantages |
Disadvantages |
| Differential centrifugation |
The method
consists of several centrifugation steps
aiming to remove cells, large vesicles
and debris and precipitate exosomes. |
Differential
centrifugation is the standard and very
common method used to isolate exosomes
from biological fluids and media. |
The efficiency
of the method is lower when viscous
biological fluids such as plasma and
serum are used for analysis. |
| Density gradient centrifugation |
This method
combines ultracentrifugation with
sucrose density gradient. |
The method
allows separation of the low-density
exosomes from other vesicles, particles
and contaminants. |
Very high
sensitivity to the centrifugation time. |
| Size exclusion chromatography |
Size-exclusion
chromatography separates macromolecules
on the base of their size. It applies a
column packed with porous polymeric
beads. |
The method
allows precise separation of large and
small molecules and application of
various solutions. Compared to
centrifugation methods, the structure of
exosomes isolated by chromatography is
not affected by shearing force. |
The method
requires a long running time, which
limits applications of chromatographical
isolation for processing multiple
biological samples. |
| Filtration |
Ultrafiltration
membranes are used to separate exosomes
from proteins and other macromolecules.
The exosomal population is concentrated
on the membrane. |
Filtration
allows separation of small particles and
soluble molecules from exosomes. During
the process the exosomal population is
concentrated by the filtration membrane. |
Exosomes can
adhere to the filtration membranes and
become lost for the following analysis.
Also, since the additional force is
applied to pass the analyzed liquid
through the membranes, the exosomes can
potentially be deformed or damaged. |
| Polymer-based precipitation |
The technique
includes mixing the biological fluid
with polymer-containing precipitation
solution, incubation step and
centrifugation at low speed. |
The advantages
of precipitation include the mild effect
on isolated exosomes and usage of
neutral pH. |
Polymer-based
precipitation methods co-isolate
non-vesicular contaminants, including
lipoproteins. Also, the presence of the
polymer material may not be compatible
with down-stream analysis. |
| Immunological separation |
Various
immunological methods are applied.
Magnetic beads bound to the specific
antibodies are used to isolate exosomes.
Also, ELISA-based separation method was
developed. |
The method
allows isolation of all exosomes or
selective subtypes of exosomes. Also, it
may be applied for characterization and
quantitation of exosomal proteins. |
The method is
not applicable for large sample volumes.
Also, the isolated vesicles may lose the
functional activity. |
| Isolation by sieving |
This technique
isolates exosomes by sieving them via a
membrane and performing filtration by
pressure or electrophoresis. |
Relatively short
separation time and gives high purity of
isolated exosomes. |
Low recovery of
isolated exosomes. |
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Standardization
of sample collection, isolation and
analysis methods in extracellular vesicle
research.
Witwer KW, Buzás EI, Bemis LT, Bora A, Lässer
C, Lötvall J, Nolte-'t Hoen EN, Piper MG,
Sivaraman S, Skog J, Théry C, Wauben MH,
Hochberg F.
J Extracell Vesicles. 2013 May 27;2
The
emergence of publications on extracellular
RNA (exRNA) and extracellular vesicles (EV)
has highlighted the potential of these
molecules and vehicles as biomarkers of
disease and therapeutic targets. These
findings have created a paradigm shift, most
prominently in the field of oncology,
prompting expanded interest in the field and
dedication of funds for EV research. At the
same time, understanding of EV subtypes,
biogenesis, cargo and mechanisms of
shuttling remains incomplete. The techniques
that can be harnessed to address the many
gaps in our current knowledge were the
subject of a special workshop of the
International Society for Extracellular
Vesicles (ISEV) in New York City in October
2012. As part of the "ISEV Research Seminar:
Analysis and Function of RNA in
Extracellular Vesicles (evRNA)", 6
round-table discussions were held to provide
an evidence-based framework for isolation
and analysis of EV, purification and
analysis of associated RNA molecules, and
molecular engineering of EV for therapeutic
intervention. This article arises from the
discussion of EV isolation and analysis at
that meeting. The conclusions of the round
table are supplemented with a review of
published materials and our experience.
Controversies and outstanding questions are
identified that may inform future research
and funding priorities. While we emphasize
the need for standardization of specimen
handling, appropriate normative controls,
and isolation and analysis techniques to
facilitate comparison of results, we also
recognize that continual development and
evaluation of techniques will be necessary
as new knowledge is amassed. On many points,
consensus has not yet been achieved and must
be built through the reporting of
well-controlled experiments.
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The impact of
disparate isolation methods for
extracellular vesicles on downstream RNA
profiling.
Van Deun J, Mestdagh P, Sormunen R, Cocquyt V,
Vermaelen K, Vandesompele J, Bracke M, De
Wever O, Hendrix A.
J Extracell Vesicles. 2014 Sep 18;3 --
eCollection 2014.
Despite
an enormous interest in the role of
extracellular vesicles, including exosomes,
in cancer and their use as biomarkers for
diagnosis, prognosis, drug response and
recurrence, there is no consensus on
dependable isolation protocols. We provide a
comparative evaluation of 4 exosome
isolation protocols for their usability,
yield and purity, and their impact on
downstream omics approaches for biomarker
discovery. OptiPrep density gradient
centrifugation outperforms
ultracentrifugation and ExoQuick and Total
Exosome Isolation precipitation in terms of
purity, as illustrated by the highest number
of CD63-positive nanovesicles, the highest
enrichment in exosomal marker proteins and a
lack of contaminating proteins such as
extracellular Argonaute-2 complexes. The
purest exosome fractions reveal a unique
mRNA profile enriched for translation,
ribosome, mitochondrion and nuclear lumen
function. Our results demonstrate that
implementation of high purification
techniques is a prerequisite to obtain
reliable omics data and identify
exosome-specific functions and biomarkers.
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Methods of
isolating extracellular vesicles impact
down-stream analyses of their cargoes.
Douglas D. Taylor & Sahil Shah
Methods (2015)
Viable
tumor cells actively release vesicles into
the peripheral circulation and other
biologic fluids, which exhibit proteins and
RNAs characteristic of that cell. Our group
demonstrated the presence of these
extracellular vesicles of tumor origin
within the peripheral circulation of cancer
patients and proposed their utility for
diagnosing the presence of tumors and
monitoring their response to therapy in the
1970s. However, it has only been in the past
10 years that these vesicles have garnered
interest based on the recognition that they
serve as essential vehicles for
intercellular communication, are key
determinants of the immunosuppressive
microenvironment observed in cancer and
provide stability to tumor-derived
components that can serve as diagnostic
biomarkers. To date, the clinical utility of
extracellular vesicles has been hampered by
issues with nomenclature and methods of
isolation. The term ‘‘exosomes’’ was
introduced in 1981 to denote any
nanometer-sized vesicles released outside
the cell and to differentiate them from
intracellular vesicles. Based on this
original definition, we use ‘‘exosomes’’ as
synonymous with ‘‘extracellular vesicles.’’
While our original studies used
ultracentrifugation to isolate these
vesicles, we immediately became aware of the
significant impact of the isolation method
on the number, type, content and integrity
of the vesicles isolated. In this review, we
discuss and compare the most commonly
utilized methods for purifying exosomes for
post-isolation analyses. The exosomes
derived from these approaches have been
assessed for quantity and quality of
specific RNA populations and specific marker
proteins. These results suggest that, while
each method purifies exosomal material,
there are pros and cons of
each and there are critical issues linked
with centrifugation-based methods, including
co-isolation of non-exosomal materials,
damage to the vesicle’s membrane structure
and non-standardized parameters leading to
qualitative and quantitative variability.
The down-stream analyses of these resulting
varying exosomes can yield misleading
results and conclusions.
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Comparison of
ultracentrifugation, density gradient
separation, and immunoaffinity capture
methods for isolating human colon cancer
cell line LIM1863-derived exosomes.
Tauro BJ, Greening DW, Mathias RA, Ji H,
Mathivanan S, Scott AM, Simpson RJ.
Methods. 2012 Feb;56(2): 293-304
Exosomes
are 40-100nm extracellular vesicles that are
released from a multitude of cell types, and
perform diverse cellular functions including
intercellular communication, antigen
presentation, and transfer of oncogenic
proteins as well as mRNA and miRNA. Exosomes
have been purified from biological fluids
and in vitro cell cultures using a variety
of strategies and techniques. However, all
preparations invariably contain varying
proportions of other membranous vesicles
that co-purify with exosomes such as shed
microvesicles and apoptotic blebs. Using the
colorectal cancer cell line LIM1863 as a
cell model, in this study we performed a
comprehensive evaluation of current methods
used for exosome isolation including
ultracentrifugation (UC-Exos), OptiPrep™
density-based separation (DG-Exos), and
immunoaffinity capture using anti-EpCAM
coated magnetic beads (IAC-Exos). Notably,
all isolations contained 40-100nm vesicles,
and were positive for exosome markers (Alix,
TSG101, HSP70) based on electron microscopy
and Western blotting. We employed a
proteomic approach to profile the protein
composition of exosomes, and label-free
spectral counting to evaluate the
effectiveness of each method. Based on the
number of MS/MS spectra identified for
exosome markers and proteins associated with
their biogenesis, trafficking, and release,
we found IAC-Exos to be the most effective
method to isolate exosomes. For example,
Alix, TSG101, CD9 and CD81 were
significantly higher (at least 2-fold) in
IAC-Exos, compared to UG-Exos and DG-Exos.
Application of immunoaffinity capture has
enabled the identification of proteins
including the ESCRT-III component
VPS32C/CHMP4C, and the SNARE synaptobrevin 2
(VAMP2) in exosomes for the first time.
Additionally, several cancer-related
proteins were identified in IAC-Exos
including various ephrins (EFNB1, EFNB2) and
Eph receptors (EPHA2-8, EPHB1-4), and
components involved in Wnt (CTNNB1, TNIK)
and Ras (CRK, GRB2) signalling.
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Possibilities
and limitations of current technologies
for quantification of biological
extracellular vesicles and synthetic
mimics.
Maas SL, de Vrij J, van der Vlist EJ,
Geragousian B, van Bloois L, Mastrobattista E,
Schiffelers RM, Wauben MH, Broekman ML,
Nolte-'t Hoen EN
J Control Release. 2014 200C: 87-96
Nano-sized
extracelullar
vesicles (EVs) released by various cell
types play important roles in a plethora of
(patho)physiological processes and are
increasingly recognized as biomarkers for
disease. In addition, engineered EV and
EV-inspired liposomes hold great potential
as drug delivery systems. Major technologies
developed for high-throughput analysis of
individual EV include nanoparticle tracking
analysis (NTA), tunable resistive pulse
sensing (tRPS) and high-resolution flow
cytometry (hFC). Currently, there is a need
for comparative studies on the available
technologies to improve standardization of
vesicle analysis in diagnostic or
therapeutic settings. We investigated the
possibilities, limitations and comparability
of NTA, tRPS and hFC for analysis of tumor
cell-derived EVs and synthetic mimics (i.e.
differently sized liposomes). NTA and tRPS
instrument settings were identified that
significantly affected the quantification of
these particles. Furthermore, we detailed
the differences in absolute quantification
of EVs and liposomes using the three
technologies. This study increases our
understanding of possibilities and pitfalls
of NTA, tRPS and hFC, which will benefit
standardized and large-scale clinical
application of (engineered) EVs and
EV-mimics in the future.
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Single-step
isolation of extracellular vesicles by
size-exclusion chromatography.
Böing AN, van der Pol E, Grootemaat AE,
Coumans FA, Sturk A, Nieuwland R
J Extracell Vesicles. 2014 8;3 -- eCollection
2014.
BACKGROUND:
Isolation
of extracellular vesicles from plasma is a
challenge due to the presence of proteins
and lipoproteins. Isolation of vesicles
using differential centrifugation or
density-gradient ultracentrifugation results
in co-isolation of contaminants such as
protein aggregates and incomplete separation
of vesicles from lipoproteins, respectively.
AIM: To develop a single-step protocol to
isolate vesicles from human body fluids.
METHODS:
Platelet-free
supernatant, derived from platelet
concentrates, was loaded on a sepharose
CL-2B column to perform size-exclusion
chromatography (SEC; n=3). Fractions were
collected and analysed by nanoparticle
tracking analysis, resistive pulse sensing,
flow cytometry and transmission electron
microscopy. The concentrations of
high-density lipoprotein cholesterol (HDL)
and protein were measured in each fraction.
RESULTS:
Fractions 9-12 contained the highest
concentrations of particles larger than 70
nm and platelet-derived vesicles (46%±6 and
61%±2 of totals present in all collected
fractions, respectively), but less than 5%
of HDL and less than 1% of protein (4.8%±1
and 0.65%±0.3, respectively). HDL was
present mainly in fractions 18-20 (32%±2 of
total), and protein in fractions 19-21
(36%±2 of total). Compared to the starting
material, recovery of platelet-derived
vesicles was 43%±23 in fractions 9-12, with
an 8-fold and 70-fold enrichment compared to
HDL and protein.
CONCLUSIONS:
SEC efficiently isolates extracellular
vesicles with a diameter larger than 70 nm
from platelet-free supernatant of platelet
concentrates. Application SEC will improve
studies on the dimensional, structural and
functional properties of extracellular
vesicles.
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Current methods
for the isolation of extracellular
vesicles.
Momen-Heravi F, Balaj L, Alian S, Mantel PY,
Halleck AE, Trachtenberg AJ, Soria CE, Oquin
S, Bonebreak CM, Saracoglu E, Skog J, Kuo WP.
Biol Chem. 2013 Oct;394(10): 1253-1262
Extracellular
vesicles
(EVs), including microvesicles and exosomes,
are nano- to micron-sized vesicles, which
may deliver bioactive cargos that include
lipids, growth factors and their receptors,
proteases, signaling molecules, as well as
mRNA and non-coding RNA, released from the
cell of origin, to target cells. EVs are
released by all cell types and likely
induced by mechanisms involved in oncogenic
transformation, environmental stimulation,
cellular activation, oxidative stress, or
death. Ongoing studies investigate the
molecular mechanisms and mediators of
EVs-based intercellular communication at
physiological and oncogenic conditions with
the hope of using this information as a
possible source for explaining physiological
processes in addition to using them as
therapeutic targets and disease biomarkers
in a variety of diseases. A major limitation
in this evolving discipline is the hardship
and the lack of standardization for already
challenging techniques to isolate EVs.
Technical advances have been accomplished in
the field of isolation with improving
knowledge and emerging novel technologies,
including ultracentrifugation,
microfluidics, magnetic beads and
filtration-based isolation methods. In this
review, we will discuss the latest advances
in methods of isolation methods and
production of clinical grade EVs as well as
their advantages and disadvantages, and the
justification for their support and the
challenges that they encounter.
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Methods for
extracellular vesicles isolation in a
hospital setting.
Sáenz-Cuesta M, Arbelaiz A, Oregi A, Irizar H,
Osorio-Querejeta I, Muñoz-Culla M, Banales JM,
Falcón-Pérez JM, Olascoaga J, Otaegui D.
Front Immunol. 2015 Feb 13;6: 50
The
research in extracellular vesicles (EVs) has
been rising during the last decade. However,
there is no clear consensus on the most
accurate protocol to isolate and analyze
them. Besides, most of the current protocols
are difficult to implement in a hospital
setting due to being very time-consuming or
to requirements of specific infrastructure.
Thus, our aim is to compare five different
protocols (comprising two different
medium-speed differential centrifugation
protocols; commercially polymeric
precipitation - exoquick - acid
precipitation; and ultracentrifugation) for
blood and urine samples to determine the
most suitable one for the isolation of EVs.
Nanoparticle tracking analysis, flow
cytometry, western blot (WB), electronic
microscopy, and spectrophotometry were used
to characterize basic aspects of EVs such as
concentration, size distribution,
cell-origin and transmembrane markers, and
RNA concentration. The highest EV
concentrations were obtained using the
exoquick protocol, followed by both
differential centrifugation protocols, while
the ultracentrifugation and
acid-precipitation protocols yielded
considerably lower EV concentrations. The
five protocols isolated EVs of similar
characteristics regarding markers and RNA
concentration; however, standard protocol
recovered only small EVs. EV isolated with
exoquick presented difficult to be analyzed
with WB. The RNA concentrations obtained
from urine-derived EVs were similar to those
obtained from blood-derived ones, despite
the urine EV concentration being 10-20 times
lower. We consider that a medium-speed
differential centrifugation could be
suitable to be applied in a hospital setting
as it requires the simplest infrastructure
and recovers higher concentration of EV than
standard protocol. A workflow from sampling
to characterization of EVs is proposed.
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| Inter-cellular
Communication |
|
Secreted
microRNAs -- a new form of intercellular
communication.
Chen X, Liang H, Zhang J, Zen K, Zhang CY.
Trends Cell Biol. 2012 22(3):125-32
In
multicellular organisms, cell-to-cell
communication is of particular importance
for the proper development and function of
the organism as a whole. Intensive studies
over the past three years suggesting
horizontal transfer of secreted microRNAs
(miRNAs) between cells point to a
potentially novel role for these molecules
in intercellular communication. Using a
microvesicle-dependent, or RNA-binding
protein-associated, active trafficking
system, secreted miRNAs can be delivered
into recipient cells where they function as
endogenous miRNAs, simultaneously regulating
multiple target genes or signaling events.
In this Opinion, we summarize recent
literature on the biogenesis and uptake of
secreted miRNAs, propose a possible working
model for how secreted miRNAs might be
sorted and transferred between cells and
speculate on their biological significance.
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Microvesicles
as mediators of intercellular
communication in cancer -- the emerging
science of cellular 'debris'.
Lee TH, D'Asti E, Magnus N, Al-Nedawi K,
Meehan B, Rak J.
Semin Immunopathol. 2011 Sep;33(5): 455-467
Cancer
cells emit a heterogeneous mixture of
vesicular, organelle-like structures
(microvesicles, MVs) into their surroundings
including blood and body fluids. MVs are
generated via diverse biological mechanisms
triggered by pathways involved in oncogenic
transformation, microenvironmental
stimulation, cellular activation, stress, or
death. Vesiculation events occur either at
the plasma membrane (ectosomes, shed
vesicles) or within endosomal structures
(exosomes). MVs are increasingly recognized
as mediators of intercellular communication
due to their capacity to merge with and
transfer a repertoire of bioactive molecular
content (cargo) to recipient cells. Such
processes may occur both locally and
systemically, contributing to the formation
of microenvironmental fields and niches. The
bioactive cargo of MVs may include growth
factors and their receptors, proteases,
adhesion molecules, signalling molecules, as
well as DNA, mRNA, and microRNA (miRs)
sequences. Tumour cells emit large
quantities of MVs containing procoagulant,
growth regulatory and oncogenic cargo
(oncosomes), which can be transferred
throughout the cancer cell population and to
non-transformed stromal cells, endothelial
cells and possibly to the inflammatory
infiltrates (oncogenic field effect). These
events likely impact tumour invasion,
angiogenesis, metastasis, drug resistance,
and cancer stem cell hierarchy. Ongoing
studies explore the molecular mechanisms and
mediators of MV-based intercellular
communication (cancer vesiculome) with the
hope of using this information as a possible
source of therapeutic targets and disease
biomarkers in cancer.
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Exosomes--vesicular
carriers for intercellular communication.
Simons M and Raposo G.
Curr Opin Cell Biol. 2009 Aug;21(4): 575-581
Cells
release different types of vesicular
carriers of membrane and cytosolic
components into the extracellular space.
These vesicles are generated within the
endosomal system or at the plasma membrane.
Among the various kinds of secreted membrane
vesicles, exosomes are vesicles with a
diameter of 40-100 nm that are secreted upon
fusion of multivesicular endosomes with the
cell surface. Exosomes transfer not only
membrane components but also nucleic acid
between different cells, emphasizing their
role in intercellular communication. This
ability is likely to underlie the different
physiological and pathological events, in
which exosomes from different cell origins
have been implicated. Only recently light
have been shed on the subcellular
compartments and mechanisms involved in
their biogenesis and secretion opening new
avenues to understand their functions.
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|
Characterization
of mRNA and microRNA in human mast
cell-derived exosomes and their transfer
to other mast cells and blood CD34
progenitor cells.
Ekström K, Valadi H, Sjöstrand M, Malmhäll C,
Bossios A, Eldh M, Lötvall J.
J Extracell Vesicles. 2012; 1 -- eCollection
2012
BACKGROUND: Exosomes
are
nanosized vesicles of endocytic origin that
are released into the extracellular
environment by many different cells. It has
been shown that exosomes from various
cellular origins contain a substantial
amount of RNA (mainly mRNA and microRNA).
More importantly, exosomes are capable of
delivering their RNA content to target
cells, which is a novel way of cell-to-cell
communication. The aim of this study was to
evaluate whether exosomal shuttle RNA could
play a role in the communication between
human mast cells and between human mast
cells and human CD34(+) progenitor cells.
METHODS:
The mRNA and microRNA content of
exosomes from a human mast cell line, HMC-1,
was analysed by using microarray technology.
Co-culture experiments followed by flow
cytometry analysis and confocal microscopy
as well as radioactive labeling experiments
were performed to examine the uptake of
these exosomes and the shuttle of the RNA to
other mast cells and CD34(+) progenitor
cells.
RESULTS:
In this study, we show that human mast cells
release RNA-containing exosomes, with the
capacity to shuttle RNA between cells.
Interestingly, by using microRNA microarray
analysis, 116 microRNAs could be identified
in the exosomes and 134 microRNAs in the
donor mast cells. Furthermore, DNA
microarray experiments revealed the presence
of approximately 1800 mRNAs in the exosomes,
which represent 15% of the donor cell mRNA
content. In addition, transfer experiments
revealed that exosomes can shuttle RNA
between human mast cells and to CD34(+)
hematopoietic progenitor cells.
CONCLUSION:
These findings suggest that exosomal
shuttle RNA (esRNA) can play a role in the
communication between cells, including mast
cells and CD34(+) progenitor cells, implying
a role in cells maturation process.
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Exosomes and
other extracellular vesicles in
host-pathogen interactions.
Schorey JS, Cheng Y, Singh PP, Smith VL.
EMBO Rep. 2015 16(1): 34-43
An
effective immune response requires the
engagement of host receptors by
pathogen-derived molecules and the
stimulation of an appropriate cellular
response. Therefore, a crucial factor in our
ability to control an infection is the
accessibility of our immune cells to the
foreign material. Exosomes-which are
extracellular vesicles that function in
intercellular communication may play a key
role in the dissemination of pathogen- as
well as host-derived molecules during
infection. In this review, we highlight the
composition and function of exosomes and
other extracellular vesicles produced during
viral, parasitic, fungal and bacterial
infections and describe how these vesicles
could function to either promote or inhibit
host immunity.
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| Exosome Function & Physiology |
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Extracellular
vesicle-depleted fetal bovine and human
sera have reduced capacity to support cell
growth.
Eitan E, Zhang S, Witwer KW, Mattson MP
J Extracell Vesicles. 2015 Mar 26;4: 26373 --
eCollection 2015
BACKGROUND: Fetal
bovine
serum (FBS) is the most widely used serum
supplement for mammalian cell culture. It
supports cell growth by providing nutrients,
growth signals, and protection from stress.
Attempts to develop serum-free media that
support cell expansion to the same extent as
serum-supplemented media have not yet
succeeded, suggesting that FBS contains one
or more as-yet-undefined growth factors. One
potential vehicle for the delivery of growth
factors from serum to cultured cells is
extracellular vesicles (EVs).
METHODS:
EV-depleted FBS and human serum were
generated by 120,000g centrifugation, and
its cell growth-supporting activity was
measured. Isolated EVs from FBS were
quantified and characterized by nanoparticle
tracking analysis, electron microscopy, and
protein assay. EV internalization into cells
was quantified using fluorescent plate
reader analysis and microscopy.
RESULTS:
Most cell types cultured with EV-depleted
FBS showed a reduced growth rate but not an
increased sensitivity to the DNA-damaging
agent etoposide and the endoplasmic
reticulum stress-inducing chemical
tunicamycin. Supplying cells with isolated
FBS-derived EVs enhanced their growth.
FBS-derived EVs were internalized by mouse
and human cells wherein 65±26% of them
interacted with the lysosomes. EV-depleted
human serum also exhibited reduced cell
growth-promoting activity.
CONCLUSIONS:
EVs play a role in the cell growth
and survival-promoting effects of FBS and
human serum. Thus, it is important to take
the effect of EV depletion under
consideration when planning EV extraction
experiments and while attempting to develop
serum-free media that support rapid cell
expansion. In addition, these findings
suggest roles for circulating EVs in
supporting cell growth and survival in vivo.
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Extracellular
vesicles -- potential roles in
regenerative medicine.
De Jong OG, Van Balkom BW, Schiffelers RM,
Bouten CV, Verhaar MC
Front Immunol. 2014 Dec 3;5: 608
Extracellular
vesicles
(EV) consist of exosomes, which are released
upon fusion of the multivesicular body with
the cell membrane, and microvesicles, which
are released directly from the cell
membrane. EV can mediate cell-cell
communication and are involved in many
processes, including immune signaling,
angiogenesis, stress response, senescence,
proliferation, and cell differentiation. The
vast amount of processes that EV are
involved in and the versatility of manner in
which they can influence the behavior of
recipient cells make EV an interesting
source for both therapeutic and diagnostic
applications. Successes in the fields of
tumor biology and immunology sparked the
exploration of the potential of EV in the
field of regenerative medicine. Indeed, EV
are involved in restoring tissue and organ
damage, and may partially explain the
paracrine effects observed in stem
cell-based therapeutic approaches. The
function and content of EV may also harbor
information that can be used in tissue
engineering, in which paracrine signaling is
employed to modulate cell recruitment,
differentiation, and proliferation. In this
review, we discuss the function and role of
EV in regenerative medicine and elaborate on
potential applications in tissue
engineering.
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Therapeutic
potential of extracellular vesicles.
Merino AM, Hoogduijn MJ, Borras FE, Franquesa
M
Front Immunol. 2014 Dec 19;5: 658
Extracellular
vesicles
(EV) have emerged as important mediators of
intercellular communication. By their
origin, we can find vesicles derived from
plasmamembrane such as microvesicles,
ectosomes, and membrane particles or
exosomes, which originate in the endosomal
membrane compartment. They contain numerous
proteins, lipids, and even nucleic acids
like mRNA and miRNA that can affect the cell
sthat encounter these structures in complex
ways. The EV have recently gained interest
for their therapeutic potential both as a
treatment itself and as a biomarker of
several pathologies. There searchlines
involving EV cover a wide range of aspects
from basic research on the EV biology to the
manipulation or monitoring of EV for
therapeutic purposes.
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The Trojan
exosome hypothesis.
Gould SJ, Booth AM, Hildreth JE.
Proc Natl Acad Sci U S A. 2003 100(19):
10592-10297
We
propose that retroviruses exploit a
cell-encoded pathway of intercellular
vesicle traffic, exosome exchange, for both
the biogenesis of retroviral particles and a
low-efficiency but mechanistically important
mode of infection. This Trojan exosome
hypothesis reconciles current paradigms of
retrovirus-directed transmission with the
unique lipid composition of retroviral
particles, the host cell proteins present in
retroviral particles, the complex cell
biology of retroviral release, and the
ability of retroviruses to infect cells
independently of Envelope protein-receptor
interactions. An exosomal origin also
predicts that retroviruses pose an
unsolvable paradox for adaptive immune
responses, that retroviral antigen vaccines
are unlikely to provide prophylactic
protection, and that alloimmunity is a
central component of antiretroviral
immunity. Finally, the Trojan exosome
hypothesis has important implications for
the fight against HIV and AIDS, including
how to develop new antiretroviral therapies,
assess the risk of retroviral infection, and
generate effective antiretroviral vaccines.
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Extracellular
vesicles: the growth as diagnostics and
therapeutics -- a survey.
Roy S, Hochberg FH, Jones PS
J Extracell Vesicles. 2018 7(1): 1438720
This
article aims to document the growth in
extracellular vesicle (EV) research. Here,
we report the growth in EV-related studies,
patents, and grants as well as emerging
companies with major intent on exosomes.
Four different databases were utilized for
electronic searches of published literature:
two general databases - Scopus/Elsevier and
Web of Science (WoS), as well as two
specialized US government databases - the
USA Patent and Trademark Office and National
Institutes of Health (NIH) of the Department
of Health and Human Services. The applied
combination of key words was carefully
chosen to cover the most commonly used terms
in titles of publications, patents and
grants dealing with conceptual areas of EVs.
Within the time frame from 1 January 2000 to
31 December 2016, limited to articles
published in English, we identified output
using search strategies based upon
Scopus/Elsevier and WoS, patent filings and
NIH Federal Reports of funded grants.
Consistently, USA and UK universities are
the most frequent among the top 15
affiliations/organizations of the authors of
the identified records. There is clear
evidence of upward streaming of EV-related
publications. By documenting the growth of
the EV field, we hope to encourage a roster
of independent authorities skilled to
provide peer review of manuscripts,
evaluation of grant applications, support of
foundation initiatives and corporate
long-term planning. It is important to
encourage EV research to further identify
biomarkers in diseases and allow for the
development of adequate diagnostic tools
that could distinguish disease
subpopulations and enable personalized
treatment of patients.
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Exosomes and cancer
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Extracellular
Vesicles in Cancer: Exosomes,
Microvesicles and the Emerging Role of
Large Oncosomes.
Minciacchi VR, Freeman MR, Di Vizio D
Semin Cell Dev Biol. 2015 Feb 23
Since
their first description, extracellular
vesicles (EVs) have been the topic of avid
study in a variety of physiologic contexts
and are now thought to play an important
role in cancer. The state of knowledge on
biogenesis, molecular content and horizontal
communication of diverse types of cancer EVs
has expanded considerably in recent years.
As a consequence, a plethora of information
about EV composition and molecular function
has emerged, along with the notion that
cancer cells rely on these particles to
invade tissues and propagate oncogenic
signals at distance. The number of in vivo
studies, designed to achieve a deeper
understanding of the extent to which EV
biology can be applied to clinically
relevant settings, is rapidly growing. This
review summarizes recent studies on
cancer-derived EV functions, with an
overview about biogenesis and molecular
cargo of exosomes, microvesicles and large
oncosomes. We also discuss current
challenges and emerging technologies that
might improve EV detection in various
biological systems. Further studies on the
functional role of EVs in specific steps of
cancer formation and progression will expand
our understanding of the diversity of
paracrine signaling mechanisms in malignant
growth.
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